In Inquiry into Biology, the opening story for chapter 4 describes why biting into a chili pepper produces a burning sensation in your mouth. This is because chili peppers contain a compound called capsaicin that activates the pain receptors in your mouth, which is interpreted by the brain as the “burn.” And as every chili-head can tell you, not all peppers are equal. While many may think that the chili peppers are producing capsaicin for our benefit, there is a much more interesting story behind this compound.
Chili peppers, and indeed many plants, are in a constant state of war with the fungi. Being nonphotosynthetic, fungi have to get their nutrition from somewhere, and although many fungi are saprophytes (decomposers), there exist a significant number of species that are parasites and pathogens of plants. The sworn enemy of the chili pepper is the fungus Fusarium (spores are shown below), a very common fungus that is widely found in soils.
To combat Fusarium’s threat, chilis produce capsaicin, which inhibits the ability of the fungus to infect the plant.However the production of capsaicin comes at a fitness cost to the chilis. Fitness in biology refers to the ability to produce viable offspring for the next generation, and it is known thatplants which produce large amounts of the compound are not able to produce as many offspring. Why? Because the production of capsaicin reduces the ability of the plant to manage its water resources. And with a reduced water-efficiency comes fewer offspring.
But this is where it gets interesting. In general, Fusarium prefers moist environments (although it can live in hot, arid regions as well). So, it would make sense that chilis that are found in dry environments should produce less capsaicin, and more offspring, than their more arid, Fusarium-threatened relatives.
To test this hypothesis, researchers at the University of Washington first sampled chili plants along a 185 line in Bolivia that naturally varied in water availability. What they found was that even in the dry environments there were chilis with high amounts of capsaicin, but they only accounted for about 20% of the population. However, as the environment became wetter, the percent of high-capsaicin producing plants increased, and at the extreme end of the spectrum, in the moistest environments, all of the plants were capsaicin producers.
To test the relationship between water-efficiency and number of offspring, the researchers designed a controlled experiment in which identical populations of chili plants were grown under similar experiments and then exposed to either a normal, or water-stressed, environment. The results confirmed that plants with higher amounts of capsaicin produced fewer offspring. Although the direct link between capsaicin and water-efficiency has not yet been determined, it is evident that production of the compound comes at a fitness cost to the plant.
So the next time you bite into a really hot chili, consider that fact that what you are really experiencing is an ancient arms race between apepper and a fungi – and that the chili you are eating sacrificed its fitness for your spiceness.
Additional Resources
D. C. Haak, L. A. McGinnis, D. J. Levey, J. J. Tewksbury. Why are not all chilies hot? A trade-off limits pungency. Proceedings of the Royal Society B: Biological Sciences, 2011; DOI: 10.1098/rspb.2011.2091(full text available)
If you are involved in science education you know the importance of reaching today's students in the digital world in which they live. It appears that the folks at NSF have also gotten that message in the form of the Science 360 Radio website.
This is a fantastic resource for time-stressed educators. The site provides direct links to over 100 podcasts from a variety of NSF sponsors. Basically, if you are looking for a topic from brain chemistry to bacteria, it is here. Some of my personal favorites include:
Scientific American's 60 Second Series: 60 seconds of updates on a variety of topics, from health to tech. These may be subscribed to in iTunes, or as an RSS feed (which means that that they can be easily inserted into most course management systems). Looking for that way to start the class? Assign one of these the night before a lecture and take the first 5 minutes to talk about it in class.
MicrobeWorld : Featuring reviews of books, information on antibiotic resistance and explorations of some really interesting bacteria - all at a level that is suitable for an intro bio class.
The Academic Minute: This series of podcasts includes interviews with actual scientists who talk about the importance of their work. As always, these scientists display a real passion for their work, which students will quickly pick up on.
But that is not all - you can easily install a widget to add Science360 to your webpage or blog. Ours is up and running to the right (go ahead and click on it and check it out). The link is available from the homepage. There are apps for almost any smartphone and iPads as well. The Science360 folks are covering the spectrum with this site.
Feel free to post a comment with your favorite podcast below - or if there are some missing from the list, let us know and we may feature them on our site in a future post.
Several years ago, in one of my introductory biology classes, I mentioned that one of the most promising ways to fight diseases, such as malaria, might be to genetically engineer a better mosquito. As you may expect, the looks from the around the classroom were fairly consistent - their usually slightly-off center instructor had finally stepped over the edge. After all, shouldn't we be getting rid of mosquitos, not making them better?
While humans may be fairly adept at driving species into extinction, we seem to have a problem when it comes to mosquitoes. For diseases such as dengue and yellow fever, the mosquito we are dealing with, Aedes aegypti (shown below), has proven to be a formidable foe. The species has a very short generation time (10-14 days), and can reproduce in environments with very small amounts of water (planters and old tires are frequently used). In addition, they have exhibited the ability to very quickly evolve resistance to many forms of insecticides. Despite modern efforts to control this species, it is not only surviving, but doing well.
By James Gathany (PHIL, CDC) [Public domain], via Wikimedia Commons
One of the diseases that this mosquito is involved with is dengue fever. This is a multistage infection. The disease starts off with a high fever, pain behind the eyes, and muscle pain. But the real damage starts to occur about 24-48 hours after the fever breaks, when the capillaries of the body can become leaky, resulting in dengue hemorrhagic fever (DHF) , which may result in circulatory system failure and death. Like many hemorrhagic fevers, there are no medications or treatments.
By Mikael Häggström [Public domain], via Wikimedia Commons
Despite the fact that dengue
fever is caused by a virus, there are no vaccinations, and preventive
mechanisms focus on avoiding mosquito bites. But since dengue occurs in
the tropical regions of the globe, over 40% of the world's population is
exposed to the mosquito, and there are believed to be over 100 million
new cases per year. Avoidance of mosquito bites for densely populated areas within the range of Aedes mosquitoes is becoming increasingly difficult.
So how does one control the spread of a disease that utilizes a host species that is resilient to most of our efforts? The answer might be not to kill the mosquito, but rather to make it an inhospitable host for the virus that causes dengue. And the secret to this is Wolbachia, a species of bacteria that is a common parasite of many insect species. Wolbachia has been studied extensively in species of insects such as Drosophila (the fruit fly) and it is well-recognized as having the ability to moves rapidly through populations of insects.
Researchers have shown that the dengue virus does not reproduce well within a Wolbachia-infected mosquito. Since dengue fever can only be passed on using the mosquito as an intermediate (there is no person-to-person transmission), if the number of dengue-carrying mosquitoes can be reduced over an extended period of time, it may be possible to break the cycle of infection. This opens up the possibility of actually releasing millions of Wolbachia-infected Aedes mosquitoes into a given area, with the hopes of breaking the dengue-virus life cycle. Trials are currently underway, and if successful, may open up a new chapter in how humans regulate the spread of some of the most deadly diseases on the planet.
The picture below should be familiar to anyone with a background in biology. The birds shown here are members of the "Galapagos finches", famous for inspiring the work of Charles Darwin, but also used extensively in the classroom to talk about the founder effect.
By John Gould (14.Sep.1804 - 3.Feb.1881) [Public domain], via Wikimedia Commons
The founder effect is one of the fundamental topics of any population genetics lecture, and it used to show how random events (what is called genetic drift) shapes the genetic structure of a population. Finches and iguanas are common examples, but to be honest, most people have heard of these examples so many times that it is getting repetitious. A recent article in Science adds a new flavor to the topic of founder effect.
Recently, researchers at the University of Montreal have examined the relationship between the founder effect and fitness, or the ability to survive and pass its genes onto the next generation. What is interesting here is that their test subjects are not birds, or iguanas, but humans.
What made this study possible was the BALSAC population database, a historical record of almost 5 million events (birth and death certificates, marriage licenses, etc) spanning almost 4 centuries and focusing on the Sagueny Lac St-Jean region of Quebec (an area that was initially colonized by French immigrants in the 17th century).
In this study the researchers investigated what happens to the population immediately after it colonizes a new area and begins to expand its range. Specifically, they examined whether it was better (from a population genetics perspective) to stay in the initial area founded by the population (the range core), or to be part of the group that it expanding into new territories (the wave front). By assessing fitness based on the reproductive success (number of children produced), the researchers found that the group on the wave front of the population made a greater contribution to the genetic makeup of the population's gene pool over time. Fitness, it seems, is correlated more with expansion than staying in one place.
There are lots of applications for this research, not only for recent human migrations, but for the historical movement of hominins across the globe. The success of Homo sapiens, it appears, may be the result of its migration and the resulting founder effects, and the influence of the individuals in the wave front of these populations on the genetic makeup of the species. If nothing else, it provides something to discuss in class other than a finch.
Claudia Moreau,
Claude Bhérer,
Hélène Vézina,
Michèle Jomphe,
Damian Labuda,
and Laurent Excoffier. Deep human genealogies reveal a selective advantage to be on an expanding wave front. Science, 2011 DOI: 10.1126/science.1212880
Communicating with your online students can be challenging. While most course management systems (CMSs or LMSs) have discussion boards and email capability, the reality is that somehow as an instructor you need to drive them onto the site to get the course information -for as we all know, students will not "surf" course pages.
One solution is Twitter. In my Human Genetics class, which has been taught as both a hybrid and online course for the past five years, I use a Twitter site to inform the students of upcoming events such as assignments, quizzes, and tests.
Some best practices for using Twitter for this audience:
Provide specific instructions on how to set up a Twitter account
While the 18-25 age group may be the social network generation -the reality is that most of them do not have a Twitter account, nor even understand why they might want one. At the start of each semester I post a pre-course checklist that contains instructions on how to set up a Twitter account and subscribe to the course Twitter site. It is important that this checklist contain screenshots of exactly how to setup their accounts. Increasingly, I am abandoning the checklist aspect of the course in favor of video tutorials on how to set up and use an account.
One thing that you want to inform your students of is the fact that they do not need to have your course tweets sent to their cell phones - especially of they do not have unlimited text messaging on their cell phones. Instead, I inform the students that they can set up programs such as Tweetdeck that allow them to subscribe, and filter, a variety of Twitter sources.
One additional note on Tweetdeck - it provides an easy way for an instructor to not only manage multiple Twitter accounts, but to also post information rapidly to their students. If you are going to use Twitter in your classes, I highly recommend the Tweetdeck program (and iPad app as well).
Limit the number of tweets and tell your students how to follow them
The last thing that your students want to know is what you are up to this weekend, or your political views on a certain candidate. Therefore, you need to limit the number of tweets that you send each day - and make them specific for the course.
For my course, I send out one tweet per day (usually Monday-Friday) informing the students on what is coming up over the next few days, due dates for assignments, etc. Occasionally I include tweets about current event topics that are related to the current course content - but it is important that you make it relevant to the current material, otherwise you are simply bombarding them with tweets - and that is not the goal of the course Twitter site.
Set up a second Twitter site for your other posts
On the course checklist I inform my students of a second Twitter site, RicochetScience, that they can subscribe to for information on a variety of sources. Most students actually pursue this option, but since it is not required, they do not feel obligated to read every link or tweet.
While there are many ways of communicating with your students using social media - the use of a Twitter account is by far one of the easiest for both the instructor and the student.
First of all, what is LearnSmart? Basically - LearnSmart is an adaptive learning platform that provides a student-centered assessments of learning. In other words - the program responds to what the student does and does not know, and designs a custom learning path to allow the student to obtain certain learning objectives.
While I have given numerous workshops on the benefits of LearnSmart, I have also discovered that many instructors do not yet know how to effectively assign LearnSmart for their students. They make the mistake of assigning too much material, or weighing it too heavily in their final grades. The instructors at my institution have requested that I outline a series of steps to get them into the program. Below, I have provided a brief overview that will allow an instructor to quickly and easily engage their students in the LearnSmart platform. Please note that this is just one set of guidelines on how to use the program - after you become familiar with the system, you should feel free to experiment and develop your own, course-specific best practices.
Step 1: Assigning Content
In my classes I use LearnSmart to get my students prepared for the lecture, be it virtual or traditional. Therefore, the initial assignments usually focus on the core terminology and concepts of the chapter. I have found that if I can get the students to understand key terms and concepts before class, I can spend more time developing the more difficult concepts and applications.
Most of the time - the core concepts are located in the first few major headings of the chapter (10.1, 10.2, etc). Therefore, for the pre-class assignment, I only assign those sections of the text (Step 4 will show you how to integrate the entire chapter).
The other key item in generating an assignment is to give the students time to complete the work. The goal is not to overwhelm them in scientific terminology, but to build a foundation. Therefore, using the slider bar I usually set the assignment for around 20-30 minutes average worth of work.
As you move the slider bar from right to left, you are increasing the focus on the core materials, and reducing more of the application-related content.
Step 2: Due Dates
For due dates - when possible, I assign LearnSmart material 5 days prior to the lecture. This allows the student, who increasingly has a busy schedule of classes, work, and family, ample time to complete the assignment. One of the nice aspects of LearnSmart is the fact that you do not need to complete the entire assignment at one time - so 20-30 minutes of work can easily be spread over a few days if needed.
I also always assign the same time each day for the assignments to be due. I happen to choose 1155pm (never choose 12 pm, too easily confused with 12 am), but other instructors choose the start of class for their traditional or hybrid courses. Be consistent and you will greatly reduce the number of emails from your students!
Step 3: Assigning Points
My goal for using LearnSmart is to develop an understanding of how the course material - a foundation on which I can build more difficult concepts. Therefore, I award points based on 100% completion. If you complete 100% of the LearnSmart assignment - you get 10 points towards the module grade (usually 100 or 200 points total in my classes). The eliminates the focus on right/wrong, and greatly reduces the student appeals of specific cards.
Step 4: Entering the Playground
Even though I do not assign all of the sections, I encourage the students to work on the complete chapter in LearnSmart before their exams. Actually, most of my students request this feature.
To access the complete chapter, simply enter what I call the "playground" . On each Connect site, in the lower right is an icon similar to the one below. By clicking on this icon, the students enter the LearnSmart program for the entire book.
One note of caution - it is important that you inform your students that assignments need to be completed from the Assignment list, and not from within the playground, since no grades are recorded from within the playground.
In later postings, I will discuss how you can run reports using LearnSmart, and how these reports can transform your classrooms from an instructor-focused environment to a student-centered learning arena that utilizes both adaptive learning and adaptive-taching strategies.
If you are a user of LearnSmart, I also encourage you to enroll in The Connect Community, a site where you can find active discussions on adaptive learning, case studies on classroom effectiveness, and more importantly, a community of educators who are exploring new ways of interacting with students.
There is a paradox in ecology education. The fact is that most students are very interested in the diversity of life on the planet - that is why they take biology rather than chemistry or physics for their general education requirements. But, when most professors get to the biodiversity lectures, they run through an seemingly endless series of PowerPoint slides of different organisms. And to be honest with you.. PowerPoint slides are not all that interesting.
So, how do you get across the wonder of life, and the importance of biodiversity, if you are confined to a series of jpeg images captured off of Google? The answer, of course, are videos. There are some great videos out there - Life (Discovery Channel), Great Migrations (National Geographic), and Planet Earth (Discovery Channel) - just to name a few. But most of these are too long for use in a traditional classroom, and most instructors want to focus on a specific animal.
BBC Nature has put together a tremendous resource for teaching biodiversity. It is called the BBC Nature Wildlife site, and it not only contains a downloadable tree of life, but also links to information on plants, fungi, and animals.
But perhaps the best asset on this site are the for the animals. There are videos for almost every type of animal, from the cnidarians to the vertebrates. All of these videos bring the animals to life, and portray them in their natural environments.
But what about extinct animals? How about a video of Archeopteryx narrated by David Attenborough?
There are videos on Neanderthals, and prehistoric amphibians and reptiles. Many of the videos (like the Archaeopteryx video above) many easily be embedded into any course management system. Each group contains a link to the Tree of Life Web Project - a site that is rapidly becoming an invaluable resource in science education.
So if you are looking to engage your students.. check out the BBC Nature site and see what happens
What are the general characteristics of a prokaryote shown below? Lack of a nucleus? Cell walls made of specialized sugars called peptidoglycans? Lack of membrane-bound organelles? All of the above?
from Essentials of Biology 3e - used by permission
What about none of the above? What if we found a prokaryote that lacked all of the items listed above, but was by all other characteristics, a prokaryote? What would that tell us about the evolution of the bacteria?
Many times in the classroom we are ask students to take an evolutionary "leap of faith". Since bacteria do not easily form fossils, then we may never really find the elusive link between the prokaryotes and eukaryotes. The evolution of the eukaryotes is a logical series of events, shown nicely by the endosymbiotic theory - but to be truthful, something tangible that we can point to in the classroom has been hard to come by. There has always been Giardia, the parasitic eukaryote (protistan) that lacks a mitochondria, but most evidence suggests that Giardia evolved from a eukaryote that possessed a mitochondria - so it is probably not our missing link.
However, scientists at the University of Queensland have identified a group of bacteria - called the planctomycetes, that are closer to a missing link than anything we have had in the past.
Planctomycetes are an interesting group of bacteria. They possess a form of intercellular compartments that appear to have specialized metabolic functions. One of these, called an anammoxosome (breaks down ammonia) that appears to have a similar function to the eukaryotic mitochondria. The DNA of a planctomycetes is contained within a membrane-bound nucleoid region - not quite a nucleus, but it definitely represents an internal compartment for the genetic material. Also, most of the planctomycetes lack peptidoglycans (a sugar-amino acid combination) in their cell walls. The presence of peptidoglycans is a defining characteristic of bacteria in general, and is the target of many forms of antibiotics - the fact that the planctomycetes are lacking this compound suggests that they are not a common form of bacteria. In addition, planctomycetes tend to (but not always) reproduce by budding instead of binary fission. Yeasts, a one-celled eukaryote, reproduce by budding. (Looking for a comparison of a planctomycete with a common bacteria?- download our PowerPoint for use in the classroom)
And it seems that these important bacteria may have been right under our noses for some time, for the planctomyctes are found almost everywhere. They are found in aquatic and terrestrial environments, in caves and in fecal material. and in both oxygen-rich and oxygen-poor environments. In other words, they are pretty common.
So what does this mean? As pointed out by the researchers at the University of Queensland, too often model organisms, such as E. coli, are used as the basis for lectures on bacterial physiology. And while there is a place for the model organisms, the exclusive use of them does not help our audience understand the wonderful complexity and diversity of the prokaryotes. When students see an E.coli under a microscope, they have a hard time making the connection of how this type of organism evolves over time to become a significantly complex eukaryotic cell. But if we show them that there are examples in nature of more complex prokaryotes, some of which may be the missing link, then we can help them make the connections they need in order to understand how complex life evolved from simple, one-celled organisms.
Additional Resources
Fuerst, J., & Sagulenko, E. (2011). Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function Nature Reviews Microbiology, 9 (6), 403-413 DOI: 10.1038/nrmicro2578
As I have been traveling across campuses this spring I have had many requests for resources to integrate current event topics into the classroom. Most instructors do not have time to look daily for level-appropriate resources, so the staff at RicochetScience have prepared several resources to help you quickly get the content you need.
One of these is Delicious - an online bookmarking site that allows users to set up networks and share bookmarks.
The RicochetScience Delicious site was set up specifically for introductory biology and genetics courses. Several times each week I update the site with links from Science, Nature, the National Science Foundation, EarthSky and other websites. Each of these are tagged by topic (see below) allowing you to quickly find relevant, current-event topics for your classes.
A really nice tutorial for using Delicious in the classroom is available on YouTube
Once you have subscribed to Delicious, you can easily set up RSS feeds (see link on the bottom of each Delicious site) and import these directly into your course management system. For example, in Connect, all you have to do is click on the RSS feed icon on the bottom of your course and enter the RSS feed URL.
For those of you who are still looking for additional resources, you can also generate RSS feeds from the RicochetScience Twitter site or the MaderBiology twitter site. The RicochetScience Twitter contains daily updates on a number of topics associated with introductory biology, whereas the MaderBiology Twitter site contains areas specific for the Mader series of textbooks from McGraw-Hill. Both of these contain appropriate content for your course management systems.
Of course, you can always link directly to this blog using any of the links to the right.
While it is clear that plants evolved from a green algal ancestor some 470-500 MYA, the question has always been.. which one? We know that plants and the green algae share the same photosynthetic pigments (chlorophyll a and b), store their energy as starch, and contain the fiber cellulose in their cell walls. But that is a general description for many of the green algae. After all, there are lots of green algae, from the mobile Chlamydomonas to the multicellular Ulva. Saying that the ancestor of the plants was a green algae is like saying that your ancestors came from Europe, a nice general statement, but it really doesn't tell you much about who you are.
Biology, 10th edition - McGraw-Hill Publishing, used by permission
A team of researchers out of Germany and Canada have provided a possible answer to this question - a group of conjugating algae that includes Spirogyra. Conjugating green algae reproduce sexually by temporarily linking the cytoplasm of two cells, allowing the exchange of genetic information. By studying the genomics of over forty different types of green algae, the researchers were able to construct an evolutionary tree that suggests that Spirogyra, or its close relatives, were the ancestor of the green plants. (these trees are available online)
Spirogyra is no stranger to the introductory biology classroom. Since it is easy to culture and observe, it is a common specimen in freshman labs. Furthermore, as can be seen in the video below, it has a unique configuration of its cloroplasts that gives the organism its name.
So the next time Spirogyra is mentioned, don't consider it just another green algae. Instead, think of it as one of those pivotal species that played an important role in forming the ecosystems that are the basis of our modern world.